msigdbr rds - Zenodo
May 10, 2025 · Data for msigdbr R package.
Immune-epithelial-stromal networks define the cellular ... - Zenodo
Apr 22, 2025 · spatial_transcriptomics_zenodo.RDS - Seurat object RDS file with 10x Visium spatial transcriptomics dataset. gamma_delta.RDS - Seurat object RDS file with scRNA-Seq 10x dataset …
10X scRNA-seq and Stereo-seq processed data for paper 'Spatial ...
Jan 24, 2025 · The 10X scRNA-seq processed data of CS9 human embryo stored in rds (cs9_scRNA_annotation.rds) and h5ad (cs9_scRNA_annotation.h5ad) format file, respectively. The …
IMMUcan panel 1 cell type classification - Zenodo
Jul 26, 2024 · sce_raw.rds_ is the `SingleCellExperiment` object containing all cells from the 179 images. the trained classifier has been applied to this dataset which can be used to view the …
Single-cell spatial transcriptomics (6k-plex CosMx SMI ... - Zenodo
Dec 9, 2024 · The dataset is provided as a Seurat object in .rds format, and consists of in situ transcripts for 6075 genes in 232,802 cells + metadata (see Metadata section below).
Development, evaluation and application of NicheNet: datasets
Jun 28, 2019 · * datasets to demonstrate application possibilities of NicheNet: - pemt_signature.txt: p-EMT geneset for which upstream regulators will be predicted - hnscc_expression.rds: single-cell …
Multi-organ CD45+ immune cell atlas - Zenodo
Dec 29, 2023 · MultiOrgan_MetaAtlas_total_level3_qc.rds: an rds file containing a Seurat object 114275 cells (RNA integrated assays, PCA and UMAP reductions and quality metrics)
Systematic reconstruction of molecular pathway signatures using ...
Dec 18, 2024 · HClust_Pathway_celltype_specific_genelist.rds: The cell-line specific pathway gene lists from hierarchical clustering analysis independently done on each cell line9.
EPICv2 Re-annotated Manifest version 1.0 - Zenodo
Feb 26, 2025 · The other two files (EPICv2_reannotated_manifest_forcomparison_v1.0.csv.zip and EPICv2_reannotated_manifest_forcomparison_v1.0.rds) contain the novel annotation and original …
Multi-Omic Single-Cell Dissection of Leukemic T-Cell Lymphoma
Nov 30, 2024 · - "seurat_harmony.Rds" and "seurat_harmony_t.Rds": These Seurat objects were used to produce Figure 2 in this publication. "seurat_tcell_obj.Rds" is a subset of "seurat_harmony.Rds" …